The polyclonal CD8 T cell response to influenza M158–66 generates a fully connected network of cross-reactive clonotypes to structurally related peptides: a …

GV Petrova, EN Naumova, J Gorski - The Journal of Immunology, 2011 - journals.aai.org
GV Petrova, EN Naumova, J Gorski
The Journal of Immunology, 2011journals.aai.org
Cross-reactivity of T cells is defined as recognition of two or more peptide–MHC complexes
by the same T cell. Although examples of cross-reactivity have been reported, a detailed
examination of cross-reactivity has not been performed. In this study, we took advantage of
the high degree of polyclonality in the BV19 T cell repertoire responding to influenza M1 58–
66 in HLA-A2 individuals to obtain a measure of simple cross-reactivity. We used
substitutions that incrementally change the structure of the M1 58–66 peptide to measure …
Abstract
Cross-reactivity of T cells is defined as recognition of two or more peptide–MHC complexes by the same T cell. Although examples of cross-reactivity have been reported, a detailed examination of cross-reactivity has not been performed. In this study, we took advantage of the high degree of polyclonality in the BV19 T cell repertoire responding to influenza M1 58–66 in HLA-A2 individuals to obtain a measure of simple cross-reactivity. We used substitutions that incrementally change the structure of the M1 58–66 peptide to measure how the HLA-A2–restricted response adapts to these changes. In three HLA-A2 adult subjects, we identified the BV19 clonotypes in the recall response to the influenza epitope M1 58–66 and 12 M1 peptides substituted at TCR contact position 63 or 65. The fraction of cross-reactive clonotypes in the M1 58–66 repertoire varied from 45–58% in the three donors. The extent of cross-reactivity, which is the additional number of peptides recognized by a single clonotype, is as high as six. We summarized the data using graph theory, with the cross-reactive clonotypes connecting the different HLA-A2 peptides recognized. The cross-reactive clonotypes form a well-connected network that could provide protection from virus-escape variants. We predict that any new pathogen with an epitope whose shape corresponds to that of the peptides that we studied would find a pre-existing repertoire ready to respond to it. We propose that in adult memory repertoires, previously encountered epitopes may have generated similar cross-reactive repertoires.
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